SAiryscan

SAiryscan is a python proof of concept of the algorithms developed in the publication: Optic letters

The implementation is based on PyTorch for it capabilities of using the GPU if available.

Quick start

The easiest way to use the code without modifications is to use de command line interface:

airyscan -i celegans.czi -r SRegisterPosition -m ISM -o celegans_ism.tiff

To build a custom pypeline in python please refer to the API documentation Guide