Welcome to STracking’s documentation!

Contents:

• Introduction
  • Context
  • Library components
• Install
  • Using PyPI
  • From source
• Quick start
  • Input images
  • Particles detections
  • Particles linking
  • Particles properties
  • Tracks features
  • Tracks filter
• Guide
  • Library components
  • Read and Write
  • Pipeline
• Example 1: Stracking workflow
  • Load data
  • Create an empty napari viewer
  • Display volumetric timeseries
  • LoG 3D+t detection
  • Spots properties
  • Tracker
  • Features - tracking
  • Features tracking
• Example 2: StarDist (Detection) + Stracking (Tracker)
  • Load trained mode
  • StarDist: Prediction and detection
  • Create an empty napari viewer
  • Display Input and StarDist Prediction
  • Display spots from StarDist
  • Linker
  • Display tracks
• Available tools
  • Containers
  • Detectors
  • Properties
  • Linkers
  • Features
  • Filters
  • IO

Indices and tables

• Index

• Module Index

• Search Page